The power of genetic diversity in genome-wide association studies of lipids [We find that increasing diversity rather than studying additional individuals of European ancestry results in substantial improvements in fine-mapping functional variants and portability of polygenic prediction] nature.com/articles/s4158…
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πŸ‘€︎ u/razznick
πŸ“…︎ Dec 10 2021
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False discovery rate control in genome-wide association studies with population structure pnas.org/content/118/40/e…
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πŸ‘€︎ u/Jamescao_95
πŸ“…︎ Dec 13 2021
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"Genome-wide association study and multi-trait analysis of opioid use disorder identifies novel associations in 639,709 individuals of European and African ancestry", Deak et al 2021 medrxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Dec 06 2021
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Identifying New COVID-19 Receptor Neuropilin-1 in Severe Alzheimer’s Disease Patients Group Brain Using Genome-Wide Association Study Approach frontiersin.org/articles/…
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πŸ‘€︎ u/icloudbug
πŸ“…︎ Oct 24 2021
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[Article] A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer’s disease

Wightman, D.P., Jansen, I.E., Savage, J.E. et al. A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer’s disease. Nat Genet 53, 1276–1282 (2021).

DOI: https://doi.org/10.1038/s41588-021-00921-z

URL: https://www.nature.com/articles/s41588-021-00921-z

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πŸ‘€︎ u/COLDOASIS_j
πŸ“…︎ Sep 13 2021
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"Dissecting polygenic signals from genome-wide association studies on human behaviour", Abdellaoui & Verweij 2021 gwern.net/docs/genetics/c…
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πŸ‘€︎ u/gwern
πŸ“…︎ Sep 11 2021
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Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males bipartisanalliance.com/20…
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πŸ‘€︎ u/jordiwmata
πŸ“…︎ Sep 18 2021
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Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging [2021, open-access] genomebiology.biomedcentr…
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πŸ“…︎ Jul 01 2021
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Methodology from genome-wide association studies accurately flags more deadly SARS-CoV-2 variant hsph.harvard.edu/news/pre…
πŸ‘︎ 6
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πŸ‘€︎ u/shallah
πŸ“…︎ Aug 26 2021
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"Large-scale genome-wide association study of food liking reveals genetic determinants and genetic correlations with distinct neurophysiological traits", May-Wilson et al 2021 biorxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Jul 29 2021
🚨︎ report
Large-scale genome-wide association study of food liking reveals genetic determinants and genetic correlations with distinct neurophysiological traits.

β€œ Abstract

Variable preferences for different foods are among the main determinants of their intake and are influenced by many factors, including genetics. Despite considerable twins' heritability, studies aimed at uncovering food-liking genetics have focused mostly on taste receptors. Here, we present the first results of a large-scale genome-wide association study of food liking conducted on 161,625 participants from UK Biobank. Liking was assessed over 139 specific foods using a 9-point hedonic scale. After performing GWAS, we used genetic correlations coupled with structural equation modelling to create a multi-level hierarchical map of food liking. We identified three main dimensions: high caloric foods defined as "Highly palatable", strong-tasting foods ranging from alcohol to pungent vegetables, defined as "Learned" and finally "Low caloric" foods such as fruit and vegetables. The "Highly palatable" dimension was genetically uncorrelated from the other two, suggesting that two independent processes underlie liking high reward foods and the Learned/Low caloric ones. Genetic correlation analysis with the corresponding food consumption traits revealed a high correlation, while liking showed twice the heritability compared to consumption. For example, fresh fruit liking and consumption showed a genetic correlation of 0.7 with heritabilities of 0.1 and 0.05, respectively. GWAS analysis identified 1401 significant food-liking associations located in 173 genomic loci, with only 11 near taste or olfactory receptors. Genetic correlation with morphological and functional brain data (33,224 UKB participants) uncovers associations of the three food-liking dimensions with non-overlapping, distinct brain areas and networks, suggestive of separate neural mechanisms underlying the liking dimensions. In conclusion, we created a comprehensive and data-driven map of the genetic determinants and associated neurophysiological factors of food liking beyond taste receptor genes.β€œ

https://www.biorxiv.org/content/10.1101/2021.07.28.454120v1

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πŸ‘€︎ u/Only8livesleft
πŸ“…︎ Jul 29 2021
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A massive genome-wide association study (GWAS) of genetic and health records of 1.2 million people from four separate data banks has identified 178 gene variants linked to major depression, a disorder that will affect one of every five people during their lifetimes. news.yale.edu/2021/05/27/…
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πŸ‘€︎ u/Wagamaga
πŸ“…︎ May 27 2021
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The amoral nonsense of Orchid’s embryo selection: Orchid is planning to use polygenic risk scores derived from genome-wide association studies to perform polygenic embryo selection for complex diseases liorpachter.wordpress.com…
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πŸ‘€︎ u/Epistaxis
πŸ“…︎ Apr 13 2021
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Erasmus Summer Programme 2021 - Advanced Course on Genome-Wide Association Studies

https://preview.redd.it/cvmcc4ihrxa71.jpg?width=1199&format=pjpg&auto=webp&s=d6e1ca52de74231bebca19edbc3797386a9570d0

This year's revamped edition of advanced GWAS course is offered completely online, under the organizational arm of the programme director of Genomic & Molecular Epidemiology programme at Netherlands Institute for Health Sciences (NIHES) - prof. dr. Fernando Rivadeneira.

Erasmus Medical Center, where NIHES operates, is known throughout the GWAS community as its contribution with the Rotterdam Study and more recently with the paediatric cohort study Generation R.

Within the course, you will get acquainted with the latest software used in the mega-GWAS studies (such as the ones involving the UK BioBank), the theoretical background of the GWAS studies, the downstream analyses to try and pinpoint the causal variants, as well as lectures by seasoned researchers that will present the common pitfalls and lessons learned from real-life GWAS studies.

For the course, it is expected you know (theoretically) how to run a GWAS and what it entails. Additionally, familiarity with the GNU/Linux environment a must.

Do not miss this opportunity.

More information can be found at this link.

πŸ‘︎ 3
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πŸ‘€︎ u/vidprijatelj
πŸ“…︎ Jul 13 2021
🚨︎ report
Why is the p value threshold for Genome Wide Association Studies much lower than 0.05? New to biostatistics and need to answer this in simple language for an interview, but dont know how to frame my answer. Please help!
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πŸ‘€︎ u/notcallipygian
πŸ“…︎ Apr 12 2021
🚨︎ report
The largest, UK Biobank-based, genome-wide association study of mitochondrial DNA unveils 260 new associations with phenotypes that include lifespan phys.org/news/2021-05-mot…
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πŸ“…︎ Jun 20 2021
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Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus nature.com/articles/s4159…
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πŸ‘€︎ u/urgentresearch
πŸ“…︎ Mar 21 2021
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[Article] Dissecting polygenic signals from genome-wide association studies on human behaviour

Abdellaoui, A., Verweij, K.J.H. Dissecting polygenic signals from genome-wide association studies on human behaviour. Nat Hum Behav (2021).

DOI: https://doi.org/10.1038/s41562-021-01110-y

URL: https://www.nature.com/articles/s41562-021-01110-y#article-info

πŸ‘︎ 3
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πŸ‘€︎ u/COLDOASIS_j
πŸ“…︎ May 26 2021
🚨︎ report
"Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology", Mullins et al 2021 gwern.net/docs/genetics/h…
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πŸ‘€︎ u/gwern
πŸ“…︎ Jun 09 2021
🚨︎ report
After analyzing multiple genome-wide association studies (GWAS), scientists discover a large number of overlapping genes shared by cognitive ability and self-reported depression, although this genetic link is "not straightforward," the researchers say. inverse.com/mind-body/gen…
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πŸ‘€︎ u/CyborgTomHanks
πŸ“…︎ Jan 20 2021
🚨︎ report
Erasmus Summer Programme 2021 - Advanced Course on Genome-Wide Association Studies

https://preview.redd.it/cvmcc4ihrxa71.jpg?width=1199&format=pjpg&auto=webp&s=d6e1ca52de74231bebca19edbc3797386a9570d0

This year's revamped edition of advanced GWAS course is offered completely online, under the organizational arm of the programme director of Genomic & Molecular Epidemiology programme at Netherlands Institute for Health Sciences (NIHES) - prof. dr. Fernando Rivadeneira.

Erasmus Medical Center, where NIHES operates, is known throughout the GWAS community as its contribution with the Rotterdam Study and more recently with the paediatric cohort study Generation R.

Within the course, you will get acquainted with the latest software used in the mega-GWAS studies (such as the ones involving the UK BioBank), the theoretical background of the GWAS studies, the downstream analyses to try and pinpoint the causal variants, as well as lectures by seasoned researchers that will present the common pitfalls and lessons learned from real-life GWAS studies.

For the course, it is expected you know (theoretically) how to run a GWAS and what it entails. Additionally, familiarity with the GNU/Linux environment a must.

Do not miss this opportunity.

More information can be found at this link.

πŸ‘︎ 4
πŸ’¬︎
πŸ‘€︎ u/vidprijatelj
πŸ“…︎ Jul 13 2021
🚨︎ report
Dissecting polygenic signals from genome-wide association studies on human behaviour
πŸ‘︎ 6
πŸ’¬︎
πŸ‘€︎ u/Dr-GregoryHouseMD
πŸ“…︎ May 26 2021
🚨︎ report

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