The problem of polygenic scoring of embryos for IQ and autism

I've noticed a lot of pro-natalism, assortative mating, and pro-polygenic scoring for IQ among rats and also pro polygenic scoring for IQ. This is a case against it.

I haven't seen Scott acknowledge this already, but he seems to have all the information to come to this conclusion but still talks positively about polygenic scoring for IQ.

I've been thinking about this a lot because I'm a rat that married another rat and we have an autistic child. He is not intellectually disabled (normal IQ) but his autism is nonetheless quite severe. This isn't the fun "really likes trains a lot" kind of autism but the "will scream for an hour if I point out a mistake on his math homework" kind and the "I can't hire a babysitter because they've all quit after one time" and he will likely never be able to move out or hold down a job, and so I'm stuck living with him FOREVER. This is especially bad as he is unpleasant to interact with. Consequently I regret having children at all, it is 100% not been worth it.

I have rat friends who had relatively normal/pleasant children, or at least easy going on

... keep reading on reddit ➑

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πŸ‘€︎ u/272314
πŸ“…︎ Jan 22 2022
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"Polygenic Heterogeneity Across Obsessive-Compulsive Disorder Subgroups Defined by a Comorbid Diagnosis", Strom et al 2021 frontiersin.org/articles/…
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πŸ‘€︎ u/gwern
πŸ“…︎ Jan 26 2022
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Is there anything methodologically unsound about Polygenic Risk Scores?

I've seen a few comments here that seemingly throw shade at PRS. Is there a problem with the methodology per se, or is the problem solely with non-geneticists misunderstanding and abusing PRS for their own ends?

My understanding of PRS as a non-geneticist is that it's a linear prediction from your single nucleotide polymorphisms to a particular phenotype, and for traits where GWAS explains a large proportion of the variation, then the PRS will be highly correlated with phenotypical variation and therefore the PRS will be meaningful. For traits where GWAS doesn't currently work as well (e.g. IQ), the PRS will contain some signal, but otherwise will only be loosely correlated with the phenotype of interest. Is there any methodological weakness that I've missed with this understanding?

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πŸ‘€︎ u/BestAdventures555
πŸ“…︎ Dec 04 2021
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"ExPRSweb - An Online Repository with Polygenic Risk Scores for Common Health-related Exposures", Ma et al 2022 medrxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Jan 20 2022
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"Dimensional characterizations of gender diversity are associated with higher polygenic propensity for cognitive performance in a neurodiverse sample", Thomas et al 2021 medrxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Dec 14 2021
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A selection pressure landscape for 870 human polygenic traits ["88% of these traits underwent polygenic change in the past 2,000–3,000 years"] nature.com/articles/s4156…
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πŸ‘€︎ u/razznick
πŸ“…︎ Nov 16 2021
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"A polygenic score for educational attainment partially predicts voter turnout", Dawes et al 2021 pnas.org/content/118/50/e…
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πŸ‘€︎ u/gwern
πŸ“…︎ Dec 13 2021
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For breeders out there I’m curious on what polygenic actually means in the animal? I assumed it’s there but not visible, but not quite sure so thought I’d ask
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πŸ‘€︎ u/ItNotNotNotMe
πŸ“…︎ Dec 06 2021
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"Relationship between rice farming and polygenic scores potentially linked to agriculture in China", Zhu et al 2021 royalsocietypublishing.or…
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πŸ‘€︎ u/gwern
πŸ“…︎ Nov 13 2021
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The power of genetic diversity in genome-wide association studies of lipids [We find that increasing diversity rather than studying additional individuals of European ancestry results in substantial improvements in fine-mapping functional variants and portability of polygenic prediction] nature.com/articles/s4158…
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πŸ‘€︎ u/razznick
πŸ“…︎ Dec 10 2021
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A selection pressure landscape for 870 human polygenic traits nature.com/articles/s4156…
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πŸ‘€︎ u/Jamescao_95
πŸ“…︎ Nov 16 2021
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"Evaluation of polygenic prediction methodology within a reference-standardized framework", Pain et al 2021 journals.plos.org/plosgen…
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πŸ‘€︎ u/gwern
πŸ“…︎ Nov 15 2021
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[Article] A selection pressure landscape for 870 human polygenic traits

Song, W., Shi, Y., Wang, W. et al. A selection pressure landscape for 870 human polygenic traits. Nat Hum Behav (2021).

DOI: https://doi.org/10.1038/s41562-021-01231-4

URL: https://www.nature.com/articles/s41562-021-01231-4

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πŸ‘€︎ u/COLDOASIS_j
πŸ“…︎ Nov 19 2021
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Understanding Nebula’s polygenic risk score and percentile rankings

Hi all - am super new to Nebula and just got my results. I have no background in genetics and have been struggling to understand the polygenic risk score / percentile rankings Nebula shares. First question: am I right to think of the risk score as effectively a Z score? Or is it something different? Second question (ok, third question, but second topic): does anyone know anything about Nebula’s user base? I’m guessing that it probably is meaningfully different from the population as a whole, which makes it hard for me to really know what to make of the percentile rankings …

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πŸ“…︎ Nov 07 2021
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"High trait variability in optimal polygenic prediction strategy within multiple-ancestry cohorts", Lehmann et al 2021 biorxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Nov 23 2021
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Educational attainment polygenic score predicts inhibitory control and academic skills in early and middle childhood onlinelibrary.wiley.com/d…
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πŸ‘€︎ u/razznick
πŸ“…︎ Aug 07 2021
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"Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence", Donati et al 2021 nature.com/articles/s4159…
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πŸ‘€︎ u/gwern
πŸ“…︎ Nov 08 2021
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"A selection pressure landscape for 870 human polygenic traits", Song et al 2021 gwern.net/docs/genetics/s…
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πŸ‘€︎ u/gwern
πŸ“…︎ Nov 16 2021
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Anyone seeing a ton of 100th percentile in polygenic scores?

Finally got my results. Not sure if I'm missing something, or if I am, like Mr. Burns, just so insanely sick that everything is perfectly in balance, resulting in invincibility.
100th for 5 or 6 diseases, in the 95+ percentile for about 15 or 20 others. Is this normal?

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πŸ‘€︎ u/blistovmhz
πŸ“…︎ Jul 09 2021
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"Integrative analysis of the plasma proteome and polygenic risk of cardiometabolic diseases", Ritchie et al 2021 nature.com/articles/s4225…
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πŸ‘€︎ u/gwern
πŸ“…︎ Nov 12 2021
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"Polygenic basis and biomedical consequences of telomere length variation", Codd et al 2021 nature.com/articles/s4158…
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πŸ‘€︎ u/gwern
πŸ“…︎ Oct 06 2021
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Geographic variation in the polygenic score of height in Japan link.springer.com/article…
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πŸ‘€︎ u/razznick
πŸ“…︎ Nov 10 2021
🚨︎ report
A selection pressure landscape for 870 human polygenic traits ["88% of these traits underwent polygenic change in the past 2,000–3,000 years"] nature.com/articles/s4156…
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πŸ‘€︎ u/razznick
πŸ“…︎ Nov 16 2021
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"Adjusting for Common Variant Polygenic Scores Improves Yield in Rare Variant Association Analyses", Jurgens et al 2021 biorxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Oct 20 2021
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Negative Polygenic Score but high genetic Predisposition?

Hey,

I've recently done a WGS with Nebula and trying to better unterstand my risk for certain traits and diseases. One thing I stumbled over is a particular study where I have a negative score of almost -5 but at the same time I'm in the >90th percentile for a high genetic predisposition.

My assumption was that positive polygenic scores indicate a increased risk and negative scores indicate a decreased risk, meaning they are more or less normalized to be "0" in average.

The 90th+ percentile is based on the score of other nebula users. So of course it could be that the genetic makeup of nebula users is very different from the population originally used in the GWAS. But that doesn't seem to plausible to me.

Is there another explanation why you can have a negative score but high predisposition?

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πŸ‘€︎ u/aKzenT
πŸ“…︎ Aug 25 2021
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"Polygenic basis and biomedical consequences of telomere length variation", Codd et al 2021 nature.com/articles/s4158…
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πŸ‘€︎ u/gwern
πŸ“…︎ Oct 06 2021
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"Dissecting polygenic signals from genome-wide association studies on human behaviour", Abdellaoui & Verweij 2021 gwern.net/docs/genetics/c…
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πŸ‘€︎ u/gwern
πŸ“…︎ Sep 11 2021
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"Systematic Review: How the Attention-Deficit/Hyperactivity Disorder Polygenic Risk Score Adds to Our Understanding of ADHD and Associated Traits", Ronald et al 2021 jaacap.org/article/S0890-…
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πŸ‘€︎ u/gwern
πŸ“…︎ Oct 11 2021
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Polygenic risk scores of psychiatric disorders, personality and cognitive ability can be combined for improved prediction of psychiatric problems in childhood acamh.onlinelibrary.wiley…
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πŸ‘€︎ u/alexander_neumann
πŸ“…︎ Aug 24 2021
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"Polygenic score accuracy in ancient samples: quantifying the effects of allelic turnover", Carlson et al 2021 biorxiv.org/content/10.11…
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πŸ‘€︎ u/gwern
πŸ“…︎ Sep 24 2021
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