I managed to get Googles deepmind Alphafold running. I modeled segment of DNA from M.Genitalia and also compared it to the much less accurate method of homology modeling that was used in days past. gfycat.com/fairoffbeatauk
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πŸ“…︎ Jan 03 2022
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RED FLAG! -- Insiders Selling Shares of Homology Medicines Inc (FIXX)

Recently, a member of this community suggested investing in Homology Medicines Inc which trades under the symbol "FIXX." It is a gene editing company with several "Buy" ratings.

Today, it was announced the following insiders have sold shares in $FIXX.

  • Arthur Tzianabos sold 5354 shares
  • Timothy Kelly sold 1406 shares
  • Albert Seymour sold 1661 shares
  • W. Bradford Smith sold 2182 shares
  • Gabriel Cohn sold 1661 shares

Stock Launchers is not covering this company. The above report of insider selling is merely for your information and edification.

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πŸ“…︎ Jan 12 2022
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Who wants to calculate the Khovanov homology? ;)
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πŸ‘€︎ u/noneMenon
πŸ“…︎ Dec 26 2021
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Dr. Peter McCullough: β€œThe spike protein has some homology to HIV. v.redd.it/6fck1qsstd681
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πŸ‘€︎ u/parkstar86
πŸ“…︎ Dec 18 2021
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[nCafΓ©] Magnitude Homology golem.ph.utexas.edu/categ…
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πŸ‘€︎ u/noneMenon
πŸ“…︎ Dec 08 2021
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Researchers From Edinburgh and Oxford Propose β€˜Dist2Cycle’: A Simplicial Neural Network For Homology Localization

Researchers from The University of Edinburgh and Oxford propose a GNN model (Dist2Cycle) for localizing homological information in the form of distance functions between each point on complex to its nearest homology generating feature.

Since homology-related information is contained in its null space, the research team focused on the subspace spanned by eigenvectors corresponding to the lowest values (eigenvalues) instead of using the most significant ones (eigenvectors) of the relevant Laplacian operator. The research group implemented this method by calculating the most-significant subspace of an inverted version of their operator, which they believe is more optimal than traditional ones.

Quick Read | Paper | Github

https://preview.redd.it/6tmwvuos8jw71.png?width=1392&format=png&auto=webp&s=9e2e3ded8913f2081ccc41b5c86396dbd6a87c9c

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πŸ‘€︎ u/techsucker
πŸ“…︎ Oct 30 2021
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Inferring homology from BLAST scores/statistics

Hello,

I have some proteins with blast homologs, and I am trying to get a quantitative measure of the representativeness of each match. As I understand, everyone normally compares blast alignments using bit scores, as these are database-size independent. However (please correct me if I'm wrong) bit-scores only describe the quality of the HSP itself, not how representative that HSP/bit score is of it's parent protein.

Would I be barking up the wrong tree if I DIYed a score for comparison? One of the main reasons I'm asking is I'm not particularly hot on BLAST statistics (so this may all be unnecessary) and I know making up your own stats can be a bad idea.

My score would be something like:

(bitscore * hit_perc_coverage) / log (evalue)

This would hopefully approximate to:

(quality of HSP * HSP representativeness of protein) / reliability of HSP quality

NB - I would take the log to stop differences in E-value massively biasing the final score.

Thanks for reading!

EDIT

Having thought about it a bit more, dividing by the log of the e-value would decrease the overall score when the e-value has larger absolute exponents (i.e. when the e-value decreases, assuming the e-value is below 1). I think this would be bad, as smaller/better e values would give smaller final scores than larger/worse e values, but you would be looking for higher scores being better from the perspective of the coverage/bit score. This means a better (but potentially still crap!) score would likely be something more like:

bitscore * hit_perc_coverage * log (evalue)
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πŸ‘€︎ u/hello_friendssss
πŸ“…︎ Oct 04 2021
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$FIXX Homology Medicines Begins Phase 1 Trial for Treatment of Hunter Syndrome

"With today’s milestone, we have also accomplished our goal of having three clinical programs by the end of 2021."

link

FIXX -2.82 %, $6.03, near all time lows, in afternoon trading. Short interest has declined to 5.5% of float.

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πŸ‘€︎ u/badgebruce
πŸ“…︎ Oct 18 2021
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[Homology] what’s the H_0(K) of a line?

Which means the simplicity complex is {p0,p1, (p0p1)} I tried to find Z_(K), is it set Z (integer)? I did this so far https://pasteboard.co/zI1hsBI43tj2.jpg

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πŸ‘€︎ u/kelvin400
πŸ“…︎ Sep 24 2021
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genetic homology of the SARS-CoV-2 variants

hi r/medicine

I've been looking into mutations and genetic homology between variants of the coronavirus for a non-academic article i'm writing but I can't seem to find exact numbers on the degree of genetic homology between the wuhan strain and, for example, the delta strain. Does anyone have any resources on this, or advice on where to look?

Thanks!

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πŸ‘€︎ u/PM_ME_UR_QUESO
πŸ“…︎ Aug 04 2021
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$FIXX Homology Medicines stock

$FIXX Homology Medicines stock with a bottom breakout watch above 7.55 , see https://stockconsultant.com/?FIXX

FIXX Homology Medicines stock chart

#investing #stocks #wallstreet #stockmarket #money

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πŸ‘€︎ u/StockConsultant
πŸ“…︎ Jul 02 2021
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What is reason for homology? Bots, human behavior?
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πŸ‘€︎ u/88Noncents
πŸ“…︎ May 17 2021
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Computational topology as a Go package. Compute bases for simplicial homology groups, Betti numbers, integrals with respect to the Euler characteristic and more. github.com/raphaelreyna/g…
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πŸ‘€︎ u/rareyna
πŸ“…︎ Apr 05 2021
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You Could Have Invented Homology, Part 1: Topology | Boarbarktree youtube.com/watch?v=pSjah…
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πŸ‘€︎ u/Boarbarktree
πŸ“…︎ Jan 25 2021
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Most recently published paper on SARS-CoV-2’s sequence homology by Nobel Laureate, Luc Mongtagnier, who claimed the virus contains HIV inserts/sequences zenodo.org/record/3975578
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πŸ‘€︎ u/genericwan
πŸ“…︎ Aug 09 2020
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Persistence Homology Guidebook

Hi everyone,

I'm doing my master thesis in algebric-topology and I want to delve into persitence homology.
Until now I'v always used coeficients in Z_2, and I want to understand the basis with coefficient in Z. Has anyone got any decent book or paper explaining that part?

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πŸ‘€︎ u/NotBarbamento
πŸ“…︎ Jun 15 2021
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How Mathematicians Use Homology to Make Sense of Topology | Quanta Magazine. "Originally devised as a rigorous means of counting holes, homology provides a scaffolding for mathematical ideas, allowing for a new way to analyze the shapes within data." quantamagazine.org/how-ma…
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πŸ‘€︎ u/flexibeast
πŸ“…︎ May 12 2021
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How to search for target proteins for homology modelling

Can anyone please suggest me how to search for a target protein to perform homology modeling?....I have no clue in this and I am just starting this brand new for a project. I would greatly appreciate your help.

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πŸ‘€︎ u/rupturec2
πŸ“…︎ Jun 07 2021
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You Could Have Invented Homology, Part 3: Boundaries & The Big Idea | Boarbarktree youtu.be/j9JJJoTjIpY
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πŸ‘€︎ u/Boarbarktree
πŸ“…︎ Feb 17 2021
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